{"id":"anthropics-knowledge-work-plugins-bio-research-skills-nextflow-development","title":"nextflow-development","type":"skill","industry":"data-research","roles":["general"],"summary":"Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.","summary_lang":"en","source_url":"https://github.com/anthropics/knowledge-work-plugins/blob/main/bio-research/skills/nextflow-development/SKILL.md","raw_url":"https://raw.githubusercontent.com/SiinXu/agent-academy/main/data/mirror/anthropics-knowledge-work-plugins-bio-research-skills-nextflow-development.md","upstream_raw_url":"https://raw.githubusercontent.com/anthropics/knowledge-work-plugins/main/bio-research/skills/nextflow-development/SKILL.md","repo":"anthropics/knowledge-work-plugins","author":"anthropics","license":"Apache-2.0","redistributable":true,"content_policy":"mirror-with-attribution","original":{"kind":"full","license":"Apache-2.0","url":"https://github.com/anthropics/knowledge-work-plugins/blob/main/bio-research/skills/nextflow-development/SKILL.md"},"install":"npx skills add anthropics/knowledge-work-plugins --skill nextflow-development","security":{"audited":false,"executes_code":false,"needs_credentials":false,"writes_external":false},"metrics":{"repo_stars":29734,"repo_pushed_at":"2026-10-15"},"course_step":"3-learn-rules","status":"active","first_seen":"2026-10-15T10:15:30Z","updated_at":"2026-10-15T10:15:30Z","checked_at":"2026-10-15T10:15:30Z","http_status":{"source":200},"page":"https://academy.incidental.site/r/anthropics-knowledge-work-plugins-bio-research-skills-nextflow-development/","source":"github"}